{"id":373,"date":"2016-06-24T13:46:08","date_gmt":"2016-06-24T13:46:08","guid":{"rendered":"http:\/\/44.196.76.129\/?page_id=373"},"modified":"2024-07-08T19:52:09","modified_gmt":"2024-07-08T19:52:09","slug":"research-biomedical-applications","status":"publish","type":"page","link":"https:\/\/morcoslaboratory.org\/?page_id=373","title":{"rendered":"Research &#8211; Biomedical Applications"},"content":{"rendered":"<div id=\"pl-373\"  class=\"panel-layout\" ><div id=\"pg-373-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-0-0-0\" class=\"so-panel widget widget_sow-editor panel-first-child panel-last-child\" data-index=\"0\" ><div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-editor so-widget-sow-editor-base\"\n\t\t\t\n\t\t>\n<div class=\"siteorigin-widget-tinymce textwidget\">\n\t<p><a href=\"https:\/\/morcoslaboratory.org\/wp-content\/uploads\/2015\/08\/Cancer_Targets.png\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-138 alignleft\" src=\"https:\/\/morcoslaboratory.org\/wp-content\/uploads\/2015\/08\/Cancer_Targets.png\" width=\"419\" height=\"315\" \/><\/a>We are interested in applying our methods on cancer data, such as genomic, proteomic data, to unravel the connections between cancer progression, anti-cancer therapeutic effects, and molecular alterations in cancer cells and tissues. Currently, our focus is to uncover protein- drug networks based on expression data, genetic signatures for the sensitivity of popular anti-cancer agents, and provide evidence for personalized medicine.<\/p>\n<\/div>\n<\/div><\/div><\/div><\/div><div id=\"pg-373-1\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-1-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-1-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"1\" ><div class=\"panel-widget-style panel-widget-style-for-373-1-0-0\" ><div class=\"textwidget\"><p class=\"p1\">Rachel Nechushtai, Linda Rowland, Ola Karmi, Henri-Baptiste Marjault, Thi Thao Nguyen, Shubham Mittal, Raheel S Ahmed, DeAna Grant, Camila Manrique-Acevedo, Faruck Morcos, Jos\u00e9 N Onuchic, Ron Mittler. <span class=\"publication\"> CISD3\/MiNT is required for complex I function, mitochondrial integrity, and skeletal muscle maintenance.<\/span> <em>Proceedings of the National Academy of Sciences.<\/em>.  121(22), e2405123121, 2024. <\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-1-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-1-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"2\" ><div class=\"panel-widget-style panel-widget-style-for-373-1-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 30px;border-top-width:0px;border-bottom-width:0px;\"><\/span><br \/>\n[<a href=\"https:\/\/www.pnas.org\/doi\/abs\/10.1073\/pnas.2405123121\" target=\"_blank\" rel=\"noopener noreferrer\">PDF<\/a>]<br \/>\n<span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 30px;border-top-width:0px;border-bottom-width:0px;\"><\/span><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-2\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-2-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-2-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"3\" ><div class=\"panel-widget-style panel-widget-style-for-373-2-0-0\" ><div class=\"textwidget\"><p class=\"p1\">Krithika Ravishankar, Xianli Jiang, Emmett M Leddin, Faruck Morcos, G Andr\u00e9s Cisneros. <span class=\"publication\"> Computational compensatory mutation discovery approach: Predicting a PARP1 variant rescue mutation.<\/span> <em>Biophysical Journal.<\/em>.  121(19), 3663-36731, 2022. <\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-2-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-2-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"4\" ><div class=\"panel-widget-style panel-widget-style-for-373-2-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 15px;border-top-width:0px;border-bottom-width:0px;\"><\/span><br \/>\n[<a href=\"https:\/\/www.cell.com\/biophysj\/fulltext\/S0006-3495(22)00429-5\" target=\"_blank\" rel=\"noopener noreferrer\">PDF<\/a>]<br \/>\n<span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 15px;border-top-width:0px;border-bottom-width:0px;\"><\/span><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-3\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-3-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-3-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"5\" ><div class=\"panel-widget-style panel-widget-style-for-373-3-0-0\" ><div class=\"textwidget\"><p class=\"p1\">H. E. Sanchez-Ibarra, L. M. Reyes-Cortes, Xian-Li Jiang, C. M. Luna-Aguirre, D. Aguirre-Trevino, I. A. Morales-Alvarado, R. B. Leon-Cachon, F. Lavalle-Gonzalez, Faruck Morcos* and H. A. Barrera-Salda\u00f1a* <span class=\"publication\"> Genotypic and Phenotypic Factors Influencing Drug Response in Mexican Patients With Type 2 Diabetes Mellitus.<\/span> <em>Frontiers in Pharmacology<\/em>.  9:320, 2018. <\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-3-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-3-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"6\" ><div class=\"panel-widget-style panel-widget-style-for-373-3-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 30px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<br \/>[<a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fphar.2018.00320\/full\" target=\"_blank\" rel=\"noopener noreferrer\">PDF<\/a>]<br \/><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 30px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-4\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-4-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-4-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"7\" ><div class=\"panel-widget-style panel-widget-style-for-373-4-0-0\" ><div class=\"textwidget\"><p class=\"p1\">Xianli Jiang, Emmanuel Martinez-Ledesma, Faruck Morcos. <span class=\"publication\"> Revealing protein networks and gene-drug connectivity in cancer from direct information.<\/span> <em>Scientific Reports<\/em>.  7:3739, 2017. <\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-4-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-4-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"8\" ><div class=\"panel-widget-style panel-widget-style-for-373-4-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 1px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<br \/>[<a href=\"http:\/\/rdcu.be\/tvsS\" target=\"_blank\" rel=\"noopener noreferrer\">PDF<\/a>]<br \/><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 1px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-5\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-5-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-5-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"9\" ><div class=\"panel-widget-style panel-widget-style-for-373-5-0-0\" ><div class=\"textwidget\"><p class=\"p1\">Fang Bai, Faruck Morcos, Ryan R. Cheng, Hualiang Jiang and Jos\u00e9 N. Onuchic.<span class=\"publication\">Elucidating the druggable interface of protein\u2212protein interactions using fragment docking and coevolutionary analysis.<\/span> <em>Proc Natl Acad Sci USA.<\/em> 113 (5) E8051\u2013E8058. 2016<\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-5-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-5-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"10\" ><div class=\"panel-widget-style panel-widget-style-for-373-5-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 27px;border-top-width:0px;border-bottom-width:0px;\"><\/span><\/p>\n<p style=\"text-align: center;\">[<a href=\"http:\/\/www.pnas.org\/content\/113\/50\/E8051.full.pdf\" target=\"_blank\" rel=\"noopener\">PDF<\/a>]<\/p>\n<p><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 27px;border-top-width:0px;border-bottom-width:0px;\"><\/span><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-6\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-6-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-6-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"11\" ><div class=\"panel-widget-style panel-widget-style-for-373-6-0-0\" ><div class=\"textwidget\"><p class=\"p1\">F.Bai*, Faruck Morcos*, Y.S. Sohn, M. Darash-Yahana, C.O. Rezende, C.H. Lipper, M.L. Paddock, L. Song,\u00a0Y. Luo, S.H. Holt, S. Tamir, E.A. Theodorakis, P.A. Jennings, J.N. Onuchic, R. Mittler and R. Nechushtai.\u00a0<span class=\"publication\">The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer.<\/span> Proc Natl Acad Sci USA. 112(12) 3698-3703, 2015.<br \/><em><a href=\"http:\/\/www.mammarycellnews.com\/issue\/volume-7-09-mar-12\/\" target=\"_blank\">Highlighted in Mammalian Cell News<\/a><\/em><\/p><\/div><\/div><\/div><\/div><div id=\"pgc-373-6-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-6-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"12\" ><div class=\"panel-widget-style panel-widget-style-for-373-6-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 47px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<br \/>[<a href=\"http:\/\/www.pnas.org\/content\/112\/12\/3698.long\" target=\"_blank\">PDF<\/a>]<br \/><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 45px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-7\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-7-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-7-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"13\" ><div class=\"panel-widget-style panel-widget-style-for-373-7-0-0\" ><div class=\"textwidget\"><p>S. Tamir, M.L. Paddock, M. Darash-Yahana-Baram, S.H. Holt, Y.S. Sohn, L. Agranat, D. Michaeli, J.T. Sto-<br \/> eth, C.H. Lipper, Faruck Morcos, I.Z. Cabantchik, J.N. Onuchic, P.A. Jennings, R. Mittler, R. Nechushtai.<br \/> <span class=\"publication\">Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease.<\/span> <em>Biochim. Biophys. Acta<\/em>, 1853(6) 1294-1315, 2015<\/p>\n<\/div><\/div><\/div><\/div><div id=\"pgc-373-7-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-7-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"14\" ><div class=\"panel-widget-style panel-widget-style-for-373-7-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 38px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<br \/>[<a href=\"http:\/\/www.sciencedirect.com\/science\/article\/pii\/S0167488914003735\" target=\"_blank\">PDF<\/a>]<br \/><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 23px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-8\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-8-0\"  class=\"panel-grid-cell\" ><div id=\"panel-373-8-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"15\" ><div class=\"panel-widget-style panel-widget-style-for-373-8-0-0\" ><div class=\"textwidget\"><p>S. Tamir, S. Rotem, C. Katz , Faruck Morcos, K. Hailey, J. Zuris, C. Wang, A. Conlan, C. Lipper, M. Paddock,\u00a0R. Mittler, J.N. Onuchic, P.A. Jennings, A. Frieddler, R. Nechushtai. <span class=\"publication\"> An Integrated Strategy Reveals the\u00a0Protein Interface between the Cancer Targets Bcl-2 and NAF-1.<\/span> <em>Proc Natl Acad Sci USA<\/em>. 111(14) 5177-5182,\u00a02014<\/p>\n<\/div><\/div><\/div><\/div><div id=\"pgc-373-8-1\"  class=\"panel-grid-cell\" ><div id=\"panel-373-8-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"16\" ><div class=\"panel-widget-style panel-widget-style-for-373-8-1-0\" ><div class=\"textwidget\"><p style=\"text-align: center;\"><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 23px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<br \/>[<a href=\"http:\/\/www.pnas.org\/content\/111\/14\/5177.short\" target=\"_blank\">PDF<\/a>]<br \/><span class=\"\" style=\"display:block;clear:both;height: 0px;padding-top: 6px;border-top-width:0px;border-bottom-width:0px;\"><\/span>\u00a0<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-373-9\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-373-9-0\"  class=\"panel-grid-cell panel-grid-cell-empty panel-grid-cell-mobile-last\" ><\/div><div id=\"pgc-373-9-1\"  class=\"panel-grid-cell panel-grid-cell-empty\" ><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>We are interested in applying our methods on cancer data, such as genomic, proteomic data, to unravel the connections between cancer progression, anti-cancer therapeutic effects, and molecular alterations in cancer cells and tissues. Currently, our focus is to uncover protein- drug networks based on expression data, genetic signatures for the sensitivity of popular anti-cancer agents, <a class=\"moretag\" href=\"https:\/\/morcoslaboratory.org\/?page_id=373\">Read More &#8230;<\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":38,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-373","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/pages\/373","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=373"}],"version-history":[{"count":35,"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/pages\/373\/revisions"}],"predecessor-version":[{"id":1349,"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/pages\/373\/revisions\/1349"}],"up":[{"embeddable":true,"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=\/wp\/v2\/pages\/38"}],"wp:attachment":[{"href":"https:\/\/morcoslaboratory.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=373"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}